PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022062-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8142.65 Da    PI: 10.8148
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022062-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.2e-26959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien + rqvtfskRrng+lKK  ELS+LCdaeva++ifs++gk y ++s
  WALNUT_00022062-RA  9 KRIENPTSRQVTFSKRRNGLLKKSLELSILCDAEVAILIFSPSGKAYQFAS 59
                        79**********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.132161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-29265IPR002100Transcription factor, MADS-box
CDDcd002655.91E-35266No hitNo description
PRINTSPR004041.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KSLELSILCD AEVAILIFSP SGKAYQFASH  60
ELVSIIIISL LRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_D9e-20267166Myocyte-specific enhancer factor 2A
3mu6_C9e-20267166Myocyte-specific enhancer factor 2A
3mu6_B9e-20267166Myocyte-specific enhancer factor 2A
3mu6_A9e-20267166Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1900733e-92KM190073.1 Carya cathayensis MADS-like protein (TM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466902.11e-35PREDICTED: MADS-box transcription factor 50-like, partial
RefseqXP_012830552.13e-35PREDICTED: MADS-box transcription factor 14-like isoform X1
SwissprotP0C5B21e-29MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A097C2622e-37A0A097C262_9R
STRINGVIT_17s0000g01230.t014e-33(Vitis vinifera)
STRINGPOPTR_0012s10190.11e-33(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-30AGAMOUS-like 20